Parallelization Research of Circle Detection Based on Hough Transform

Abstract There is a problem of too long computation time in Circle detection of Hough transform. In this paper, two paralleled methods are given based on Threading Building Blocks (TBB) and CUDA, by utilizing multi-core and GPU, the most timeconsuming part of circle detection is coped with parallelization. Experimental results show that the circle detection algorithms proposed in this paper has extremely good result of acceleration

Spatio-temporal Tendency Reasoning for Human Body Pose and Shape Estimation from Videos

In this paper, we present a spatio-temporal tendency reasoning (STR) network for recovering human body pose and shape from videos. Previous approaches have focused on how to extend 3D human datasets and temporal-based learning to promote accuracy and temporal smoothing. Different from them, our STR aims to learn accurate and natural motion sequences in an unconstrained environment through temporal and spatial tendency and to fully excavate the spatio-temporal features of existing video data. To this end, our STR learns the representation of features in the temporal and spatial dimensions respectively, to concentrate on a more robust representation of spatio-temporal features. More specifically, for efficient temporal modeling, we first propose a temporal tendency reasoning (TTR) module. TTR constructs a time-dimensional hierarchical residual connection representation within a video sequence to effectively reason temporal sequences' tendencies and retain effective dissemination of human information. Meanwhile, for enhancing the spatial representation, we design a spatial tendency enhancing (STE) module to further learns to excite spatially time-frequency domain sensitive features in human motion information representations. Finally, we introduce integration strategies to integrate and refine the spatio-temporal feature representations. Extensive experimental findings on large-scale publically available datasets reveal that our STR remains competitive with the state-of-the-art on three datasets. Our code are available at https://github.com/Changboyang/STR.git.Comment: Accepted by BMVC202

Non-sterile fermentation of food waste using thermophilic and alkaliphilic Bacillus licheniformis YNP5-TSU for 2,3-butanediol production

Conversion of food waste into 2,3-butanediol (2,3-BDO) via microbial fermentation provides a promising way to reduce waste disposal to landfills and produce sustainable chemicals. However, sterilization of food waste, an energy- and capital-costly process, is generally required before fermentation to avoid any contamination, which reduces the energy net output and economic feasibility of food waste fermentation. In this study, we investigated the non-sterile fermentation of food waste to produce 2,3-BDO using a newly isolated thermophilic and alkaliphilic B. licheniformis YNP5-TSU. Three unitary food waste samples (i.e., pepper, pineapple, cabbage wastes) and one miscellaneous food waste mixture were respectively inoculated with B. licheniformis YNP5-TSU under non-sterile conditions. At 50 °C and an initial pH of 9.0, B. licheniformis YNP5-TSU was able to consume all sugars in food waste and produce 5.2, 5.9, 5.9 and 4.3 g/L of 2,3-BDO within 24 h from pepper, pineapple, cabbage and miscellaneous wastes, respectively, corresponding to a yield of 0.40, 0.38, 0.41 and 0.41 g 2,3-BDO/g sugar. These 2,3-BDO concentrations and yields from the non-sterile fermentations were comparable to those from the traditional sterile fermentations, which produced 4.0–6.8 g/L of 2,3-BDO with yields of 0.31–0.48 g 2,3-BDO/g sugar. Moreover, B. licheniformis was able to ferment various food wastes (pepper, pineapple and miscellaneous wastes) without any external nutrient addition and produce similar 2,3-BDO quantities. The non-sterile fermentation of food waste using novel thermophilic and alkaliphilic B. licheniformis YNP5-TSU provides a robust and energy-efficient approach to convert food waste to high-value chemicals

Peanut (Arachis hypogaea) Expressed Sequence Tag Project: Progress and Application

Many plant ESTs have been sequenced as an alternative to whole genome sequences, including peanut because of the genome size and complexity. The US peanut research community had the historic 2004 Atlanta Genomics Workshop and named the EST project as a main priority. As of August 2011, the peanut research community had deposited 252,832 ESTs in the public NCBI EST database, and this resource has been providing the community valuable tools and core foundations for various genome-scale experiments before the whole genome sequencing project. These EST resources have been used for marker development, gene cloning, microarray gene expression and genetic map construction. Certainly, the peanut EST sequence resources have been shown to have a wide range of applications and accomplished its essential role at the time of need. Then the EST project contributes to the second historic event, the Peanut Genome Project 2010 Inaugural Meeting also held in Atlanta where it was decided to sequence the entire peanut genome. After the completion of peanut whole genome sequencing, ESTs or transcriptome will continue to play an important role to fill in knowledge gaps, to identify particular genes and to explore gene function

Inhibition of chemotherapy resistant breast cancer stem cells by a ROR1 specific antibody.

Breast cancers enduring treatment with chemotherapy may be enriched for cancer stem cells or tumor-initiating cells, which have an enhanced capacity for self-renewal, tumor initiation, and/or metastasis. Breast cancer cells that express the type I tyrosine kinaselike orphan receptor ROR1 also may have such features. Here we find that the expression of ROR1 increased in breast cancer cells following treatment with chemotherapy, which also enhanced expression of genes induced by the activation of Rho-GTPases, Hippo-YAP/TAZ, or B lymphoma Mo-MLV insertion region 1 homolog (BMI1). Expression of ROR1 also enhanced the capacity of breast cancer cells to invade Matrigel, form spheroids, engraft in Rag2-/-[Formula: see text] mice, or survive treatment with paclitaxel. Treatment of mice bearing breast cancer patient-derived xenografts (PDXs) with the humanized anti-ROR1 monoclonal antibody cirmtuzumab repressed expression of genes associated with breast cancer stemness, reduced activation of Rho-GTPases, Hippo-YAP/TAZ, or BMI1, and impaired the capacity of breast cancer PDXs to metastasize or reengraft Rag2-/-[Formula: see text] mice. Finally, treatment of PDX-bearing mice with cirmtuzumab and paclitaxel was more effective than treatment with either alone in eradicating breast cancer PDXs. These results indicate that targeting ROR1 may improve the response to chemotherapy of patients with breast cancer

Analyses of winter circulation types and their impacts on haze pollution in Beijing

To better understand the interannual variation of winter haze pollution, this paper investigates winter circulation types and their impacts on local meteorological conditions and haze pollution during 38 winters from 1980 to 2017 in Beijing. Circulation types were classified by T-mode principal component analysis combined with the K-means cluster method using European Centre for Medium-range Weather Forecasts ERA-interim sea level pressure data. The results can significantly distinguish the cold air process, a degeneration of cold air, and stagnant weather. The cold air process over Beijing was accompanied by a low temperature, high relative humidity, large pressure gradient and near-surface wind speed, and deep mixing layer. The cold air process facilitated pollutant dispersion and transport to the outside (such as East China, Bohai Sea, and Yellow Sea) and formed low PM2.5 concentrations and low frequencies of haze days. In contrast, the local meteorology and haze pollution were almost the inverse for stagnant weather. The local meteorological conditions and haze pollution for the degeneration of cold air are between the previous circulation types. Considering PM2.5 observation during 2010–2017, the occurrence frequency of cold air was low in the recent winters of 2013, 2014 and 2017, and resulted in severe PM2.5 pollution. High frequency of stagnant weather (48.4%) was one of the reasons that haze pollution reached 37% during 38 winters from 1980 to 2017 over Beijing. The time series of haze frequency was negatively correlated with that of cold air frequency. Winter haze pollution was affected by climate change over Beijing. During 38 winters from 1980 to 2017, a decreased trend of haze days was found, which was partly related to an increased trend of cold air frequency. However, the trends of haze days and cold air in Beijing were not significant based on regression analysis

Transcriptomic analysis of cell envelope inhibition by prodigiosin in methicillin-resistant Staphylococcus aureus

Methicillin-resistant Staphylococcus aureus (MRSA) is a leading threat to public health as it is resistant to most currently available antibiotics. Prodigiosin is a secondary metabolite of microorganisms with broad-spectrum antibacterial activity. This study identified a significant antibacterial effect of prodigiosin against MRSA with a minimum inhibitory concentration as low as 2.5 mg/L. The results of scanning electron microscopy, crystal violet staining, and confocal laser scanning microscopy indicated that prodigiosin inhibited biofilm formation in S. aureus USA300, while also destroying the structure of the cell wall and cell membrane, which was confirmed by transmission electron microscopy. At a prodigiosin concentration of 1.25 mg/L, biofilm formation was inhibited by 76.24%, while 2.5 mg/L prodigiosin significantly reduced the vitality of MRSA cells in the biofilm. Furthermore, the transcriptomic results obtained at 1/8 MIC of prodigiosin indicated that 235and 387 genes of S. aureus USA300 were significantly up- and downregulated, respectively. The downregulated genes were related to two-component systems, including the transcriptional regulator LytS, quorum sensing histidine kinases SrrB, NreA and NreB, peptidoglycan biosynthesis enzymes (MurQ and GlmU), iron-sulfur cluster repair protein ScdA, microbial surface components recognizing adaptive matrix molecules, as well as the key arginine synthesis enzymes ArcC and ArgF. The upregulated genes were mainly related to cell wall biosynthesis, as well as two-component systems including vancomycin resistance-associated regulator, lipoteichoic acid biosynthesis related proteins DltD and DltB, as well as the 9 capsular polysaccharide biosynthesis proteins. This study elucidated the molecular mechanisms through which prodigiosin affects the cell envelope of MRSA from the perspectives of cell wall synthesis, cell membrane and biofilm formation, providing new potential targets for the development of antimicrobials for the treatment of MRSA

Identifying potential anti-COVID-19 pharmacological components of traditional Chinese medicine Lianhuaqingwen capsule based on human exposure and ACE2 biochromatography screening

药学院吴彩胜副教授联合海军军医大学柴逸峰教授团队在连花清瘟胶囊防治新冠肺炎的药理活性成分和机制研究方面取得新进展，这项研究基于HRMS和智能非靶向数据挖掘技术，全面分析了对多次给药后人血浆和尿液中的连花清瘟胶囊成分，合成了全新的ACE2生物色谱固定相，筛选出连花清瘟胶囊提取物和人尿液样品潜在的ACE2靶向成分。这项研究是连花清瘟胶囊的人体暴露信息的首次报道，为其在抗COVID-19的药理活性成分和作用机制研究提供了化学和药理学理论依据。本研究证明基于人体暴露的研究策略可用于高效的发掘中草药中的药效活性物质。【Abstract】Lianhuaqingwen (LHQW) capsule, a herb medicine product, has been clinically proved to be effective in coronavirus disease 2019 (COVID-19) pneumonia treatment. However, human exposure to LHQW components and their pharmacological effects remain largely unknown. Hence, this study aimed to determine human exposure to LHQW components and their anti-COVID-19 pharmacological activities. Analysis of LHQW component profiles in human plasma and urine after repeated therapeutic dosing was conducted using a combination of HRMS and an untargeted data-mining approach, leading to detection of 132 LHQW prototype and metabolite components, which were absorbed via the gastrointestinal tract and formed via biotransformation in human, respectively. Together with data from screening by comprehensive 2D angiotensin-converting enzyme 2 (ACE2) biochromatography, 8 components in LHQW that were exposed to human and had potential ACE2 targeting ability were identified for further pharmacodynamic evaluation. Results show that rhein, forsythoside A, forsythoside I, neochlorogenic acid and its isomers exhibited high inhibitory effect on ACE2. For the first time, this study provides chemical and biochemical evidence for exploring molecular mechanisms of therapeutic effects of LHQW capsule for the treatment of COVID-19 patients based on the components exposed to human. It also demonstrates the utility of the human exposure-based approach to identify pharmaceutically active components in Chinese herb medicines.The authors would like to thank Prof. Chuan Li in Shanghai Institute of Materia Medica, Chinese Academy of Sciences (Shanghai, China) to provide biological samples and technical guidance. This research was supported by Natural Science Foundation of China, China, (Grant Nos. 81773688, U1903119, 81973291, and 81973275); Zhejiang University Special Scientific Research Fund for COVID-19 Prevention and Control, China; “Phospherus” Project of Shanghai Science and Technology Committee, China, (Grant Nos. 19QA1411500); National Major Scientific and Technological Special Project for "Significant New Drugs Development", China, (Grant No. 2020ZX09201005)